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  "Title": "A 'Shiny' App to Analyze Accelerometer-Measured Daily Physical\nBehavior Data",
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  "Authors@R": "person('Pierre-Yves', 'de Müllenheim', email = 'pydemull@uco.fr', role = c('cre', 'aut'), comment = c(ORCID = \"0000-0001-9157-7371\"))",
  "Description": "A tool to analyse 'ActiGraph' accelerometer data and to\nimplement the use of the PROactive Physical Activity in COPD\n(chronic obstructive pulmonary disease) instruments. Once\nanalysis is completed, the app allows to export results to .csv\nfiles and to generate a report of the measurement. All the\nconfigured inputs relevant for interpreting the results are\nrecorded in the report. In addition to the existing 'R'\npackages that are fully integrated with the app, the app uses\nsome functions from the 'actigraph.sleepr' package developed by\nPetkova (2021) <https://github.com/dipetkov/actigraph.sleepr/>.",
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  "Repository": "https://pydemull.r-universe.dev",
  "Date/Publication": "2025-03-21 13:16:43 UTC",
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    "actigraph",
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    },
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      "date": "2022-12-02"
    },
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      "date": "2023-02-01"
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      "date": "2023-02-13"
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    "compute_accumulation_metrics",
    "compute_bmr",
    "compute_intensity_distri_metrics",
    "compute_mets",
    "compute_pro_actigraph_score",
    "compute_pro_score_cppac",
    "compute_pro_score_dppac",
    "create_fig_mvpa",
    "create_fig_mx_by_day",
    "create_fig_mx_summary",
    "create_fig_pal",
    "create_fig_ratio_mvpa_sed",
    "create_fig_res_by_day",
    "create_fig_sed",
    "create_fig_steps",
    "create_flextable_summary",
    "get_guidelines_status",
    "get_pal_status",
    "get_ratio_mvpa_sed_comment",
    "mark_intensity",
    "mark_wear_time",
    "plot_data",
    "plot_data_with_intensity",
    "prepare_dataset",
    "rasch_transform",
    "read_agd",
    "read_agd_raw",
    "recap_by_day",
    "run_app"
  ],
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      "page": "average_results",
      "title": "Average results over valid days",
      "topics": [
        "average_results"
      ]
    },
    {
      "page": "compute_accumulation_metrics",
      "title": "Compute activity accumulation metrics",
      "topics": [
        "compute_accumulation_metrics"
      ]
    },
    {
      "page": "compute_bmr",
      "title": "Compute Basal Metabolic Rate (BMR)",
      "topics": [
        "compute_bmr"
      ]
    },
    {
      "page": "compute_intensity_distri_metrics",
      "title": "Compute intensity distribution metrics",
      "topics": [
        "compute_intensity_distri_metrics"
      ]
    },
    {
      "page": "compute_mets",
      "title": "Compute metabolic equivalent of task (MET) values",
      "topics": [
        "compute_mets"
      ]
    },
    {
      "page": "compute_mx",
      "title": "Compute MX metric",
      "topics": [
        "compute_mx"
      ]
    },
    {
      "page": "compute_peak_step_acc",
      "title": "Compute mean step accumulation (per min) from a given number of the best continous or discontinuous minutes",
      "topics": [
        "compute_peak_step_acc"
      ]
    },
    {
      "page": "compute_pro_actigraph_score",
      "title": "Compute PROactive monitor-based physical activity score for C-PPAC tool",
      "topics": [
        "compute_pro_actigraph_score"
      ]
    },
    {
      "page": "compute_pro_score_cppac",
      "title": "Provide score for each question of the C-PPAC",
      "topics": [
        "compute_pro_score_cppac"
      ]
    },
    {
      "page": "compute_pro_score_dppac",
      "title": "Provide score for each question of the D-PPAC",
      "topics": [
        "compute_pro_score_dppac"
      ]
    },
    {
      "page": "create_fig_mvpa",
      "title": "Create a figure showing the mean daily MVPA time",
      "topics": [
        "create_fig_mvpa"
      ]
    },
    {
      "page": "create_fig_mx_by_day",
      "title": "Create a radar plot for MX metrics relating to each day of the measurement of physical behavior",
      "topics": [
        "create_fig_mx_by_day"
      ]
    },
    {
      "page": "create_fig_mx_summary",
      "title": "Create a radar plot for the mean or median MX metrics relating to the measurement of physical behavior",
      "topics": [
        "create_fig_mx_summary"
      ]
    },
    {
      "page": "create_fig_pal",
      "title": "Create a figure showing the mean daily Physical Activity Level (PAL)",
      "topics": [
        "create_fig_pal"
      ]
    },
    {
      "page": "create_fig_ratio_mvpa_sed",
      "title": "Create a figure showing the mean daily MVPA/SED ratio",
      "topics": [
        "create_fig_ratio_mvpa_sed"
      ]
    },
    {
      "page": "create_fig_res_by_day",
      "title": "Create a figure with metrics shown for each day",
      "topics": [
        "create_fig_res_by_day"
      ]
    },
    {
      "page": "create_fig_sed",
      "title": "Create a figure showing the mean daily sedentary (SED) time",
      "topics": [
        "create_fig_sed"
      ]
    },
    {
      "page": "create_fig_steps",
      "title": "Create a figure showing the mean daily step count",
      "topics": [
        "create_fig_steps"
      ]
    },
    {
      "page": "create_flextable_summary",
      "title": "Create a formatted table of results",
      "topics": [
        "create_flextable_summary"
      ]
    },
    {
      "page": "do_all_analyses",
      "title": "Do all analyses at once",
      "topics": [
        "do_all_analyses"
      ]
    },
    {
      "page": "get_guidelines_status",
      "title": "Get WHO physical activity guidelines status",
      "topics": [
        "get_guidelines_status"
      ]
    },
    {
      "page": "get_ig_results",
      "title": "Get intensity gradient values and graphics",
      "topics": [
        "get_ig_results"
      ]
    },
    {
      "page": "get_pa_period_info",
      "title": "Get relevant missing physical activity information indicated by the user of the app",
      "topics": [
        "get_pa_period_info"
      ]
    },
    {
      "page": "get_pal_status",
      "title": "Get FAO physical activity level (PAL) status (http://www.fao.org/3/y5686e/y5686e07.htm#bm07.3)",
      "topics": [
        "get_pal_status"
      ]
    },
    {
      "page": "get_ratio_mvpa_sed_comment",
      "title": "Get comment about the MVPA/SED ratio",
      "topics": [
        "get_ratio_mvpa_sed_comment"
      ]
    },
    {
      "page": "mark_intensity",
      "title": "Add intensity metrics",
      "topics": [
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      ]
    },
    {
      "page": "mark_wear_time",
      "title": "Mark dataset for nonwear/wear time",
      "topics": [
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    },
    {
      "page": "plot_data",
      "title": "Plot accelerometer data for each day",
      "topics": [
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      ]
    },
    {
      "page": "plot_data_with_intensity",
      "title": "Plot accelerometer data for each day with both nonwear time and physical activity intensity categories",
      "topics": [
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      ]
    },
    {
      "page": "prepare_dataset",
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    {
      "page": "read_agd",
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    },
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      "page": "read_agd_raw",
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    },
    {
      "page": "recap_by_day",
      "title": "Summarize results by day",
      "topics": [
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    {
      "page": "run_app",
      "title": "Run the Shiny Application",
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      "title": "activAnalyzer",
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      "headings": [
        "Loading packages",
        "Getting file",
        "Preparing dataset",
        "Getting nonwear/wear time marks",
        "Viewing data with nonwear/wear time marks",
        "Viewing data with nonwear/wear time marks and with a zoom in on the figure",
        "Getting activity intensity marks",
        "Viewing data with activity intensity marks",
        "Viewing data with activity intensity marks and grey bands to highlight the daily period considered for analysis",
        "Viewing data with activity intensity marks and a zoom in on the figure",
        "Getting activity metrics by day",
        "Computing means of the metrics using the valid days",
        "Computing medians of the metrics using the valid days",
        "Showing activity volume metrics",
        "Results by day: Tabular view",
        "Results by day: Graphical view",
        "Means | Medians computed using valid days",
        "Comparisons with norms and recommendations",
        "Showing step accumulation metrics",
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        "Showing sedentary behaviour accumulation metrics based on valid days",
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        "Showing physical activity accumulation metrics based on valid days",
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      "created": "2021-10-11 10:38:55",
      "modified": "2024-09-22 19:47:56",
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